Browse of TCMCG007C33862 protein

CDS

Accession Number	TCMCG007C33862
gbkey	CDS
Protein Id	XP_009146660.1
Location	join(24740321..24740477,24740547..24740758,24741163..24741300,24741413..24741586,24741911..24742007,24742162..24742274,24742355..24742477,24742589..24742660,24742862..24742954,24743234..24743344,24743436..24743558,24743703..24743888,24743972..24744046,24744486..24744622,24744780..24744914,24745019..24745164,24745247..24745312,24745573..24745679,24745795..24745875,24745953..24746027,24746113..24746214,24746368..24746536,24746635..24746780,24746922..24747005,24747077..24747177,24747427..24747580,24747909..24747983,24748095..24748239,24748617..24749292,24749487..24749547,24749630..24749775,24749849..24750032,24750161..24750259,24750465..24750844,24750923..24751099,24751282..24751378,24751469..24751624,24751711..24751941,24752032..24752115,24752218..24752325)
Gene	LOC103870291
GeneID	103870291
Organism	Brassica rapa

Protein

Length	1931aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA249065
db_source	XM_009148412.3
Definition	rRNA biogenesis protein RRP5 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category	A
Description	Protein RRP5 homolog
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko03009        [VIEW IN KEGG]
KEGG_ko	ko:K14792        [VIEW IN KEGG]
EC	-
KEGG_Pathway	-
GOs	GO:0000460        [VIEW IN EMBL-EBI] GO:0000462        [VIEW IN EMBL-EBI] GO:0000466        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0003676        [VIEW IN EMBL-EBI] GO:0003723        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005515        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005654        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0005886        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006364        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0007275        [VIEW IN EMBL-EBI] GO:0008134        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009553        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016072        [VIEW IN EMBL-EBI] GO:0022613        [VIEW IN EMBL-EBI] GO:0030490        [VIEW IN EMBL-EBI] GO:0030684        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0032040        [VIEW IN EMBL-EBI] GO:0032501        [VIEW IN EMBL-EBI] GO:0032502        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0034470        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0034660        [VIEW IN EMBL-EBI] GO:0042254        [VIEW IN EMBL-EBI] GO:0042274        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044085        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0048229        [VIEW IN EMBL-EBI] GO:0048856        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0071944        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0097159        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1901363        [VIEW IN EMBL-EBI] GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGTGGCTCCGTCAAAACTTCCAAGTGGAAAACGTAATGACTCCACTAAAGTATTCAAGTCCTCAAAGAAACCCTTCAAGAAGACGAAGGACGATGTTGCCGCAAGGTCTGAAGCCATGGCTCTCCAGCTCGAAGACGTTCCTGACTTTCCTCGAGGGGGAGGCACTTCTCTGAGCAAAACAGAGCGAAAGAAAATATACGAAGAGGTCGACGCTGAGTTTGAAGCCGAGGAGCGTGTTTCCAAGAGGAGTAAAGGAGGTAAACCTAATAAGAAGAGAAACCCTAGCGAGGTTGACGAATTGGGATCTCTTTTCGACGGTGGTTTAACTGGGAAACGGCCTAGATATGCCAATAAGATTACCATTAAGAATATCTCTCCGGGAATGAAGCTTCTGGGAGTTGTTACAGAAGTAAACCAGAAGGATATTGTAATTAGTCTTCCAGGGGGATTACGTGGATTAGTTCGCGCAAGCGAGGCCTTGGATTTTACGGATTTCGGAACTGAGGACGATGAAAATGAACTCCTTCGAGACATTTTTTCTGTGGGCCAGCTTGTTCCTTGCTTTGTATTGCAGTTAGATGATGATAAGAAGGAGGCGGGCAAAAGGAAAATATGGCTTTCGTTGAGGCTTTCTTTGTTGCACAAGGGATTCAGTTTGGATTCCTTTCAACCGGGAATGGTAGTCACTGCAAGCGTGAAAAGCGTGGAAGATCATGGTTATATCCTTCACTTTGGATTGCCTTCTATCACAGGATTTATCAAAAAAAGCAACGATGGAAATCAAGAGTTAAAGACTGGGCAACTTATTCAGGGCGTGGTTACAAATATTGATAAAGAACGGAAAATTGTTTCTCTTAGTGCAGACCCAGATTCAGTGGCGAAGTGTGTGACCAAGGATCTTAGTGGTATGTCGTTTGATCTTCTCATACCAGGCATGATGGTTAATGCCCGTGTGCAATCTGTTCTTGAGAATGGGATACTGTTAGGATTTCTTATGTACTTTACTGGAACGGTTGATCTATTCCATTTACAAAATCCAATGTGTAACAAGAGCTGGAAGGATGAATACACTCAGACTAAGATGGTCAATGCTAGAATACTGTTTATGGATCCATCAACTAGAGCTGTTGGTTTGACGTTAAACCCACATCTTGTTGGTAACAAGGCTCCTCCTTTGCATGTCTCTAGCGGAGACATATTTGACGAAGCAAAAGTTGTCCGTGTTGATAAATCAGGCCTTCTTCTTGAACTCCTTTCTAAGCCTGTTTCAACTCCAGCATATGTTAGCACATATGACGCAGCAGAAGATGAAGTAAAGAAACTGGAAAAGAATTTCAAGGAAGGAAACCGCATCCGTGTTCGAATCCTCGGCCTTAAGCATATGGAGGGGTTGGCCATAGGGACTTTAAAGGAAAGTGCTTTTGAAGGTCCAGCTTTCACCCACTCAGATGTCAAGCCTGGTATGGTGACGAAGGCAAAAATCATATCTGTTGATACATTTGGTGCCATTGTGCAATTTCCGGGTGGTTTGAAAGCAATGTGCCCACTTCAGCATATGTCTGAGTTTGAAGTTACGAAGCCCAGGAAAAAGTTCAAGGTTGGAGCTGAATTAATATTTCGGGTGCTTGGCTGCAAATCAAAGAGAATAACTGTTACATGCAAGAAAACACTTGTCAAGTCTAAACTTCCGATTTTGAGTTCTTACGCTGATGCAACTGAAGGACTAGTGACACATGGCTGGATAACAAAGATTGAAAAGCATGGATGCTTTGTTCGCTTCTATAATGGGGTGCAAGGATTTGTTGCCAGATTTGAACTTGGATTAGAGCCTGGAAGTGATCCCAGTTCAGTGTTTCATGTCGGGGAGGTTGTCAAATGCAGAGTAACCAGTGCGGTTCATGGTACTCGAAGGATCAACCTTAGCTTTATGATAAAACCAACAAGTGTTTCTGAAGACGATTCCATCAAGTTAGGTAGTATTGTATCTGGGGTAATTGATAGTATAACTCCTCAGGCAGTCACTGTCCATGTTAAATCCAAAGGTTTGCTGAAGGGAACAGTTTCTGCTGAACATTTAGCTGATCATCATGAGCAAGCAAAACTAATGATGTCACTTTTAAGACCTGGATTTGAGCTTGATAAGCTGCTGATAATAGACATTGACGGCAATAACTTGGCCCTCTCTTCAAAGTATTCTCTGATCAAGCTTGCTGAAGAGCTTCCTTCGGATATTAGTCAGCTGCAGCCAAACTCAGTGGTTCATGGTTATGTTTGTAACTTGATTGAAAATGGCTGCTTTGTCCGTTTTCTGGGTCGGTTGACTGGTTTCGCCCCTAGAAGCAAGGCAATTGACGAACCCAGGGCAGATCTGTCAGAATCCTTCTTTGTTGGACAATCGGTTCGGGCTAATATAGTTGATATCAATCAAGAAAAAAGCAGGATAACTCTTTCATTGAAACAGTCATCTTGTGCTTCTGTAGATGCTTCTTTTATCCAGGAGTACTTCCTTACGGATGAGAAGATCTCGGACCTGCAATCATCTGATATCACTGAAAGTGAATGTAGTTGGGTTGAGAAATTCTCTATTGGGAGTTTGGTCAAGGGAACCGTACATGAGCAAAATGAACTGGGTTTGGTGGTGAATTTTGACAATATTGATAACGTGCTTGGTTTTATACCTCAGTATCATTTGGGTGGAGCTACTTTAGAACACGGTTCTGTTGTCGAAGCAGTTGTTCTTGATTTATCTAGGGCAGAGAGACTAGTTGATTTGTCTTTGCGGCCTGAGCTCATAAACAACTCAACCAAAGAGGTGTCCAGCAACCAGTCCAAAAAGAAACGTAGAAGAGCTATTTCCAAGGAACTTGAAGTCCACCAAAGGGTCAGCGCTGTTGTAGAGATTGTGAAGGAGCAATACTTGATTTTGTCGATTCCAGAACATGGTTACACTATAGGATATGCGTCAATATCAGACTATAACACACAGAAGTTACCAGTGAAACAATTTTCAGCTGGACAAAGTGTTGTTGCGTCTGTGGAGGCTCTGCAAAAGTCTTTGACGTCGGGGAGGTTGCTTCTACTTCTTGACTCTGTTTCGGGTATTTCTGATACACCCCATTCTAAGAGGACAAAGAATAAATCCAGTTGTGGGGTTGGTTCTGTTGTCCACGCCGAGATTACTGAAATAAAGCCTTTGGAAGTAAGAGTAAACTTTGGCCAAAGTTTCCGAGGAAGAATCCACATAACGGAGGTGGATGATGTAAGTACAAGTGATGAACCTTTTTCCAAATTAAGAGTCGGGCAATCAGTGTCTGCAAGGGTTATTGCAAAGCCCTGGCATACTAATATCGAAAAGAGTCTTTGGGAGCTTTCTTCAAAGCCTGCAATACTTAGAGTAGACTCCAGTGAATTGAATGGCATTCAAGTGAGGGAACAGCTTGAGTTTGTTACTGGAGAGCGTGTCAGGGGATATGTCTACAAAGTGGATAAAGAATGGGTTTGGCTGACAATATCTCGCAATGTGACGGCATGCGTGTTCATTTTAGACACTGGATGCGACGCTCAAGAACTTGAGGAGTTCGAGAGGCGTTTTCCCATTGGTAAAGCTGTTTCAGGCTATGTTCTGACGTACGATAAAGAAAAGAAAACAGCACGGTTGGTTCAGCGTCCACTACTTGATATCCAGAAAAGCATTGCCAACGGTGGAGGCTGTAAAACGGATAATCTAGACAGTAGTATTCCTGGTGTTGATGCTACTCTATTCATTCATGAAGGAGACATTCTTGGTGGAAGAATTTCTAAGATACTTCCTGGTGTTGGTGGACTTCGTGTGCAAATAGGTTCTTACGTGTTTGGGAGAGTTCCTTACGTGGTTGGGAGAGTTCATTTTACTGAAATCAATGATTCATGGGTCTCCAATCCGTTAGATGGATTTCATGAAGGTCAGTTTGTCAAGTGCAAGGTCTTGGAAATCAGCAATTCTAGTAAAGGGACTTTGCAAATTGAATTGTCGTTACGGACATCTCTAGATGGTATGACTTCTGACCAACTCTCAGAAGCTTCAAATGATAATGTCAATATATGCAAACGTTTTGAAAGGATTGAAGGTCTTTCTCCTGATATGGCCATCCAGGGTTATGTCAAGAATACGATGTCAAAAGGTTGTTTTATTATGCTTTCAAGGAAACTCGACGCAAAAGTTTTATTGTCAAATTTAAGTGATACTTTTGTCAAGGATCCCGAAAAGGAGTTTCCAGTAGGGAAACTTGTAACTGGCAGGGTGTTAAATGTCGAGTCGTTATCCAAGCGGGTAGAAGTCACTCTGAAAAAAGGAAATGCGGGTGGGCAACCAAAATCTGAATCTTATGACTTGAAGCAATTCCATGTTGGAGACGTGATTTCGGGGAGCATCAAACGAGTGGAGCCCTATGGCTTATTCATTACAATAGACAACACGAGCATGGTTGGATTATGTCATAAATCACAGCTTTCTGATGATCGTATTGAGGATGTACAAGCCAGATATGAGGCTGGGGAAAGCGTCACCGCAAAGATTTTGAAGCTGGACGAGGAAAAGCAACGTATATCGCTTGGGATGAAGAGTTCTTATTTTATGAACGACGATGATGACAAGGCACAGCCACCTTCTGATGAAAACGCTAAAGAAGACAGCATGGAATGTGATCCAGTCAATGATTCGAAGTCGGGAGTTCTTGCAGCAGTTGGTGATTTTGGGTTCCAGGAAACAGGCTATGAAAGACATAGGGGATCTTCTCTGGTTCTTTCCCAAGTTGAGTCAAGGGCTTCTATCCCTGCGCTTGAGGTTAACCTTGACGACATTGAGGAGTCGGGCTTTGACAACGATCAGAATGAGAAACTGCAGGGAGTCGACAAAGATGAAAAGAGCAAGAGAAGGGAAAAGCAAAAAGACAAAGAAGAAAGAGAGAGAAAAATACAAGCTGCTGAAGGAAGATTGCTGGAGAATCATGCTCCTGAGAGTGCTGATGAATTTGAGAAATTGGTTAGAAGCTCTCCAAATAGCAGCTTTGTCTGGATTAAGTATATGGCGTTCATGCTCAGTTTGGCTGATATTGAGAAAGCCAGGTCCATCGCTGAGAGGGCCTTGAGGACTATAAATATTCGTGAAGAAGATGAGAAGCTAAACATATGGGTTGCTTACTTCAATTTGGAAAATGAACATGGAAGTCCTCCAGAGGAAGCTGTTAAGAAAGTTTTTGAAAGAGCACGTCAATACTGTGACCCAAAGAAAGTTTACCACGCTCTCTTGGGCGTTTACGAGAGAACAGAGCAATATAAATTGGCTGATAAGCTGCTTGATGAGATGATCAAGAAGTTCAAGCAATCCTGCAAGGTTTGGTTAAGGAAAGTACAAAGTCATCTGAAGCAAGACGAGGACGACATTCAGTCTATCGTCAATCGTGCCTTGCTGTGTCTTCCGCGCCATAAGCACATTAAATTCATATCACAAACTGCTATTCTTGAGTTCAAATGCGGAGTTGCAGAGAGAGGGAGATCACTTTTTGAAGGCGTTCTTAGGGAATACCCAAAAAGAACAGACTTGTGGAGTGTTTATCTTGACCAGGAGATTCGATTGGGAGAAGTTGATGTGATTAGATCCTTGTTCGAGAGAGCCATTAGCTTGAGCTTGCCTCCTAAGAAGATGAAGTTTTTATTCAAGAAGTTCTTGGAATATGAGAAAACTGCTGGTGACGATGAGAGAGTCGAGTACGTGAAGCAAAGGGCAATGGAGTATGCCGACAGTACCTTGGCCTGA

Protein:   MVAPSKLPSGKRNDSTKVFKSSKKPFKKTKDDVAARSEAMALQLEDVPDFPRGGGTSLSKTERKKIYEEVDAEFEAEERVSKRSKGGKPNKKRNPSEVDELGSLFDGGLTGKRPRYANKITIKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEALDFTDFGTEDDENELLRDIFSVGQLVPCFVLQLDDDKKEAGKRKIWLSLRLSLLHKGFSLDSFQPGMVVTASVKSVEDHGYILHFGLPSITGFIKKSNDGNQELKTGQLIQGVVTNIDKERKIVSLSADPDSVAKCVTKDLSGMSFDLLIPGMMVNARVQSVLENGILLGFLMYFTGTVDLFHLQNPMCNKSWKDEYTQTKMVNARILFMDPSTRAVGLTLNPHLVGNKAPPLHVSSGDIFDEAKVVRVDKSGLLLELLSKPVSTPAYVSTYDAAEDEVKKLEKNFKEGNRIRVRILGLKHMEGLAIGTLKESAFEGPAFTHSDVKPGMVTKAKIISVDTFGAIVQFPGGLKAMCPLQHMSEFEVTKPRKKFKVGAELIFRVLGCKSKRITVTCKKTLVKSKLPILSSYADATEGLVTHGWITKIEKHGCFVRFYNGVQGFVARFELGLEPGSDPSSVFHVGEVVKCRVTSAVHGTRRINLSFMIKPTSVSEDDSIKLGSIVSGVIDSITPQAVTVHVKSKGLLKGTVSAEHLADHHEQAKLMMSLLRPGFELDKLLIIDIDGNNLALSSKYSLIKLAEELPSDISQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDEPRADLSESFFVGQSVRANIVDINQEKSRITLSLKQSSCASVDASFIQEYFLTDEKISDLQSSDITESECSWVEKFSIGSLVKGTVHEQNELGLVVNFDNIDNVLGFIPQYHLGGATLEHGSVVEAVVLDLSRAERLVDLSLRPELINNSTKEVSSNQSKKKRRRAISKELEVHQRVSAVVEIVKEQYLILSIPEHGYTIGYASISDYNTQKLPVKQFSAGQSVVASVEALQKSLTSGRLLLLLDSVSGISDTPHSKRTKNKSSCGVGSVVHAEITEIKPLEVRVNFGQSFRGRIHITEVDDVSTSDEPFSKLRVGQSVSARVIAKPWHTNIEKSLWELSSKPAILRVDSSELNGIQVREQLEFVTGERVRGYVYKVDKEWVWLTISRNVTACVFILDTGCDAQELEEFERRFPIGKAVSGYVLTYDKEKKTARLVQRPLLDIQKSIANGGGCKTDNLDSSIPGVDATLFIHEGDILGGRISKILPGVGGLRVQIGSYVFGRVPYVVGRVHFTEINDSWVSNPLDGFHEGQFVKCKVLEISNSSKGTLQIELSLRTSLDGMTSDQLSEASNDNVNICKRFERIEGLSPDMAIQGYVKNTMSKGCFIMLSRKLDAKVLLSNLSDTFVKDPEKEFPVGKLVTGRVLNVESLSKRVEVTLKKGNAGGQPKSESYDLKQFHVGDVISGSIKRVEPYGLFITIDNTSMVGLCHKSQLSDDRIEDVQARYEAGESVTAKILKLDEEKQRISLGMKSSYFMNDDDDKAQPPSDENAKEDSMECDPVNDSKSGVLAAVGDFGFQETGYERHRGSSLVLSQVESRASIPALEVNLDDIEESGFDNDQNEKLQGVDKDEKSKRREKQKDKEERERKIQAAEGRLLENHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEDEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYHALLGVYERTEQYKLADKLLDEMIKKFKQSCKVWLRKVQSHLKQDEDDIQSIVNRALLCLPRHKHIKFISQTAILEFKCGVAERGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKTAGDDERVEYVKQRAMEYADSTLA